diff --git a/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/bounce.bat b/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/bounce.bat
deleted file mode 100755
index 24435b7517438ab69f89977040c294162a1843a2..0000000000000000000000000000000000000000
--- a/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/bounce.bat
+++ /dev/null
@@ -1,2 +0,0 @@
-rem
-java -cp QRCodeTacticalDecisionAid-2.0-jar-with-dependencies.jar edu.nps.moves.qrtda.Main qrBounce.json
diff --git a/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/bounce.command b/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/bounce.command
deleted file mode 100755
index 1fa07cb177b625fe1f7bf2b3421766241f503690..0000000000000000000000000000000000000000
--- a/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/bounce.command
+++ /dev/null
@@ -1,4 +0,0 @@
-#!/bin/bash
-#
-cd -- "$(dirname "$BASH_SOURCE")"
-java -cp QRCodeTacticalDecisionAid-2.0-jar-with-dependencies.jar -Dapple.awt.application.name=QRBounce edu.nps.moves.qrtda.Main qrBounce.json
diff --git a/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/bounce.sh b/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/bounce.sh
deleted file mode 100755
index aa60308a805173002743269c41597bac721f4405..0000000000000000000000000000000000000000
--- a/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/bounce.sh
+++ /dev/null
@@ -1,4 +0,0 @@
-#!/bin/bash
-#
-cd -- "$(dirname "$BASH_SOURCE")"
-java -cp QRCodeTacticalDecisionAid-2.0-jar-with-dependencies.jar edu.nps.moves.qrtda.Main qrBounce.json
diff --git a/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/imageDirWatcher.sh b/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/imageDirWatcher.sh
deleted file mode 100755
index a3c37f09c2dd1d1f4b1ff7654dbc2a4481749750..0000000000000000000000000000000000000000
--- a/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/imageDirWatcher.sh
+++ /dev/null
@@ -1,4 +0,0 @@
-#!/bin/bash
-#
-#java -jar QRTda.jar ./config/imageDirectoryWatcherDecoderHeadless.json
-/Library/Java/JavaVirtualMachines/jdk1.7.0_21.jdk/Contents/Home/bin/java -jar QRTda.jar ./config/imageDirectoryWatcherDecoderHeadless.json
diff --git a/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/qrChat.bat b/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/qrChat.bat
deleted file mode 100755
index 374c2299fe1ed383a0310bec8e16f06302920855..0000000000000000000000000000000000000000
--- a/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/qrChat.bat
+++ /dev/null
@@ -1,2 +0,0 @@
-rem
-java -cp QRCodeTacticalDecisionAid-2.0-jar-with-dependencies.jar edu.nps.moves.qrtda.Main qrChat.json
diff --git a/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/qrChat.command b/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/qrChat.command
deleted file mode 100755
index d69a1616bd3b17040d3ed5a38cd14d3951b719c2..0000000000000000000000000000000000000000
--- a/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/qrChat.command
+++ /dev/null
@@ -1,4 +0,0 @@
-#!/bin/bash
-#
-cd -- "$(dirname "$BASH_SOURCE")"
-java -cp QRCodeTacticalDecisionAid-2.0-jar-with-dependencies.jar -Dapple.awt.application.name=QRChat edu.nps.moves.qrtda.Main qrChat.json
\ No newline at end of file
diff --git a/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/qrChat.sh b/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/qrChat.sh
deleted file mode 100755
index ab65086b9b53484c322000ca4fba09e85c6132f3..0000000000000000000000000000000000000000
--- a/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/qrChat.sh
+++ /dev/null
@@ -1,4 +0,0 @@
-#!/bin/bash
-#
-cd -- "$(dirname "$BASH_SOURCE")"
-java -cp QRCodeTacticalDecisionAid-2.0-jar-with-dependencies.jar edu.nps.moves.qrtda.Main qrChat.json
\ No newline at end of file
diff --git a/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/qrChatEncrypted.bat b/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/qrChatEncrypted.bat
deleted file mode 100755
index 8a24a40b7278a1c3ff589a962334e716b3f36831..0000000000000000000000000000000000000000
--- a/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/qrChatEncrypted.bat
+++ /dev/null
@@ -1,2 +0,0 @@
-rem
-java -cp QRCodeTacticalDecisionAid-2.0-jar-with-dependencies.jar edu.nps.moves.qrtda.Main qrChatEncrypted.json
\ No newline at end of file
diff --git a/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/qrChatEncrypted.command b/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/qrChatEncrypted.command
deleted file mode 100755
index 0f52c240f6bd1256a08beedfeae233a5a1183040..0000000000000000000000000000000000000000
--- a/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/qrChatEncrypted.command
+++ /dev/null
@@ -1,4 +0,0 @@
-#!/bin/bash
-#
-cd -- "$(dirname "$BASH_SOURCE")"
-java -cp QRCodeTacticalDecisionAid-2.0-jar-with-dependencies.jar -Dapple.awt.application.name="QRChat (encrypted)" edu.nps.moves.qrtda.Main qrChatEncrypted.json
\ No newline at end of file
diff --git a/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/qrChatEncrypted.sh b/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/qrChatEncrypted.sh
deleted file mode 100755
index ef3a80c7f4f3fbba145dd64d27b33b6b5307bba6..0000000000000000000000000000000000000000
--- a/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/qrChatEncrypted.sh
+++ /dev/null
@@ -1,4 +0,0 @@
-#!/bin/bash
-#
-cd -- "$(dirname "$BASH_SOURCE")"
-java -cp QRCodeTacticalDecisionAid-2.0-jar-with-dependencies.jar edu.nps.moves.qrtda.Main qrChatEncrypted.json
\ No newline at end of file
diff --git a/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/sailorhelper.bat b/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/sailorhelper.bat
deleted file mode 100755
index a648e9f22a0e24207d35c53a1c904b389a9e14e1..0000000000000000000000000000000000000000
--- a/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/sailorhelper.bat
+++ /dev/null
@@ -1,2 +0,0 @@
-rem
-java -cp QRCodeTacticalDecisionAid-2.0-jar-with-dependencies.jar edu.nps.moves.qrtda.Main sailorHelper.json
\ No newline at end of file
diff --git a/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/sailorhelper.command b/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/sailorhelper.command
deleted file mode 100755
index 3b190afe881b5ced6692f66fac303149142ebdba..0000000000000000000000000000000000000000
--- a/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/sailorhelper.command
+++ /dev/null
@@ -1,4 +0,0 @@
-#!/bin/bash
-#
-cd -- "$(dirname "$BASH_SOURCE")"
-java -cp QRCodeTacticalDecisionAid-2.0-jar-with-dependencies.jar -Dapple.awt.application.name="Optical Signalling TDA" edu.nps.moves.qrtda.Main sailorHelper.json
\ No newline at end of file
diff --git a/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/sailorhelper.sh b/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/sailorhelper.sh
deleted file mode 100755
index e660ffeaf36839854c90a746fc6e50cdaa1e51a8..0000000000000000000000000000000000000000
--- a/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/sailorhelper.sh
+++ /dev/null
@@ -1,4 +0,0 @@
-#!/bin/bash
-#
-cd -- "$(dirname "$BASH_SOURCE")"
-java -cp QRCodeTacticalDecisionAid-2.0-jar-with-dependencies.jar edu.nps.moves.qrtda.Main sailorHelper.json
\ No newline at end of file
diff --git a/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/signalFlagsDecoder.bat b/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/signalFlagsDecoder.bat
deleted file mode 100755
index 5375216bea202fbb93ba74123d52409d2b69ce98..0000000000000000000000000000000000000000
--- a/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/signalFlagsDecoder.bat
+++ /dev/null
@@ -1,2 +0,0 @@
-rem
-java -cp QRCodeTacticalDecisionAid-2.0-jar-with-dependencies.jar edu.nps.moves.qrtda.Main signalFlagsDecoder.json
diff --git a/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/signalFlagsDecoder.command b/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/signalFlagsDecoder.command
deleted file mode 100755
index 45a6308b0139d010c6f613d46a423776dd17acb3..0000000000000000000000000000000000000000
--- a/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/signalFlagsDecoder.command
+++ /dev/null
@@ -1,4 +0,0 @@
-#!/bin/bash
-#
-cd -- "$(dirname "$BASH_SOURCE")"
-java -cp QRCodeTacticalDecisionAid-2.0-jar-with-dependencies.jar -Dapple.awt.application.name="Signal Flags Decoder" edu.nps.moves.qrtda.Main signalFlagsDecoder.json
diff --git a/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/signalFlagsDecoder.sh b/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/signalFlagsDecoder.sh
deleted file mode 100755
index 3a65e3e2b0cb5b8af68e73e591bb4c316a01dbea..0000000000000000000000000000000000000000
--- a/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/signalFlagsDecoder.sh
+++ /dev/null
@@ -1,4 +0,0 @@
-#!/bin/bash
-#
-cd -- "$(dirname "$BASH_SOURCE")"
-java -cp QRCodeTacticalDecisionAid-2.0-jar-with-dependencies.jar edu.nps.moves.qrtda.Main signalFlagsDecoder.json
diff --git a/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/textDirWatcherImageDirWriter.sh b/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/textDirWatcherImageDirWriter.sh
deleted file mode 100755
index c29dbfd7118a1df1cdf5e669a9eb90cfe7bc1899..0000000000000000000000000000000000000000
--- a/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/textDirWatcherImageDirWriter.sh
+++ /dev/null
@@ -1,4 +0,0 @@
-#!/bin/bash
-#
-#java -jar QRTda.jar ./config/textDirectoryWatcherEncoderHeadless.json
-/Library/Java/JavaVirtualMachines/jdk1.7.0_21.jdk/Contents/Home/bin/java -jar QRTda.jar ./config/textDirectoryWatcherEncoderHeadless.json
diff --git a/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/throughputTestReceiver.bat b/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/throughputTestReceiver.bat
deleted file mode 100755
index b1bb995d74238b97767d837a0a292ef310d94777..0000000000000000000000000000000000000000
--- a/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/throughputTestReceiver.bat
+++ /dev/null
@@ -1,2 +0,0 @@
-rem
-java -cp QRCodeTacticalDecisionAid-2.0-jar-with-dependencies.jar edu.nps.moves.qrtda.Main throughputTestReceive.json
\ No newline at end of file
diff --git a/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/throughputTestReceiver.command b/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/throughputTestReceiver.command
deleted file mode 100755
index 6e7a2c7534f53f6f17a1c39cfbadde2544126559..0000000000000000000000000000000000000000
--- a/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/throughputTestReceiver.command
+++ /dev/null
@@ -1,4 +0,0 @@
-#!/bin/bash
-#
-cd -- "$(dirname "$BASH_SOURCE")"
-java -cp QRCodeTacticalDecisionAid-2.0-jar-with-dependencies.jar -Dapple.awt.application.name="Throughput Test Receiver" edu.nps.moves.qrtda.Main throughputTestReceive.json
\ No newline at end of file
diff --git a/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/throughputTestReceiver.sh b/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/throughputTestReceiver.sh
deleted file mode 100755
index 831fd5c47c08669fc5bdc0e37b7d8810272f9bb2..0000000000000000000000000000000000000000
--- a/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/throughputTestReceiver.sh
+++ /dev/null
@@ -1,4 +0,0 @@
-#!/bin/bash
-#
-cd -- "$(dirname "$BASH_SOURCE")"
-java -cp QRCodeTacticalDecisionAid-2.0-jar-with-dependencies.jar edu.nps.moves.qrtda.Main throughputTestReceive.json
\ No newline at end of file
diff --git a/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/throughputTestSender.bat b/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/throughputTestSender.bat
deleted file mode 100755
index 3a48e460f7dd2b1f39839637133394fe00bb688f..0000000000000000000000000000000000000000
--- a/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/throughputTestSender.bat
+++ /dev/null
@@ -1,2 +0,0 @@
-rem
-java -cp QRCodeTacticalDecisionAid-2.0-jar-with-dependencies.jar edu.nps.moves.qrtda.Main throughputTestSend.json
\ No newline at end of file
diff --git a/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/throughputTestSender.command b/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/throughputTestSender.command
deleted file mode 100755
index 93657f6cc8945eba824c7903bd25c3b4c6ae2ba6..0000000000000000000000000000000000000000
--- a/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/throughputTestSender.command
+++ /dev/null
@@ -1,4 +0,0 @@
-#!/bin/bash
-#
-cd -- "$(dirname "$BASH_SOURCE")"
-java -cp QRCodeTacticalDecisionAid-2.0-jar-with-dependencies.jar -Dapple.awt.application.name="Throughput Test Sender" edu.nps.moves.qrtda.Main throughputTestSend.json
\ No newline at end of file
diff --git a/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/throughputTestSender.sh b/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/throughputTestSender.sh
deleted file mode 100755
index d00ae9df02ea4cf51ea5874aaf850988bab2a114..0000000000000000000000000000000000000000
--- a/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/throughputTestSender.sh
+++ /dev/null
@@ -1,4 +0,0 @@
-#!/bin/bash
-#
-cd -- "$(dirname "$BASH_SOURCE")"
-java -cp QRCodeTacticalDecisionAid-2.0-jar-with-dependencies.jar edu.nps.moves.qrtda.Main throughputTestSend.json
\ No newline at end of file
diff --git a/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/zeroconfDeSequencerReceiver.sh b/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/zeroconfDeSequencerReceiver.sh
deleted file mode 100755
index 5ca4114e56204d43a58b47a228e78d3968ae9104..0000000000000000000000000000000000000000
--- a/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/zeroconfDeSequencerReceiver.sh
+++ /dev/null
@@ -1,4 +0,0 @@
-#!/bin/bash
-#
-#java -jar QRTda.jar ./config/zeroconfDeSequencerReceiver.json
-/Library/Java/JavaVirtualMachines/jdk1.7.0_21.jdk/Contents/Home/bin/java -jar QRTda.jar ./config/zeroconfDeSequencerReceiver.json
diff --git a/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/zeroconfSequencerSender.sh b/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/zeroconfSequencerSender.sh
deleted file mode 100755
index 3b72af9b840fc06685aec76af7807eac5eb72293..0000000000000000000000000000000000000000
--- a/QRCodeTacticalDecisionAidV2/src/main/resources/runScripts/zeroconfSequencerSender.sh
+++ /dev/null
@@ -1,4 +0,0 @@
-#!/bin/bash
-#
-#java -jar QRTda.jar ./config/textDirectorySequencerSenderZeroconf.json
-/Library/Java/JavaVirtualMachines/jdk1.7.0_21.jdk/Contents/Home/bin/java -jar QRTda.jar ./config/textDirectorySequencerSenderZeroconf.json